Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm.

Documentation for package ‘switchBox’ version 1.2.0

switchBox-package	A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers.
KTSP.Classify	Function to classify samples using a KTSP classifier.
KTSP.Train	Funtion for training the K-TSP classifier.
matTesting	Gene expression matrix for test set data
matTraining	Gene expression matrix for training set data
SWAP.CalculateSignedScore	Function to calculate the pair-wise scores.
SWAP.Filter.Wilcoxon	Statistical feature filtering based on Wilcoxon test on the ranks of expressions.
SWAP.KTSP.Classify	Function to classify samples using a KTSP classifier.
SWAP.KTSP.Statistics	Function computing TSP votes (comparisons) and combine their votes. The default is the kTSP statistics, sum of the votes.
SWAP.KTSP.Train	Function for training the K-TSP classifier.
switchBox	A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers.
testingGroup	Testing set phenotypes
trainingGroup	Training set phenotypes