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| ncdfFlow-package | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis. |
| as.flowSet | convert from a 'ncdfFlowSet' to a 'flowSet' |
| clone.ncdfFlowSet | Clone a ncdfFlowSet |
| colnames-method | Accessors compatible with those for 'flowSet' |
| colnames<- | Accessors compatible with those for 'flowSet' |
| colnames<--method | Accessors compatible with those for 'flowSet' |
| compensate-method | Accessors compatible with those for 'flowSet' |
| densityplot-method | flowViz plot methods. |
| filter-method | Accessors compatible with those for 'flowSet' |
| getFileName | get the cdf file name associated with ncdfFlowSet object |
| getIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| getIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| initIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| initIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| lapply-method | lapply method for ncdfFlowList |
| length-method | Accessors compatible with those for 'flowSet' |
| load_ncfs | save/load a ncdfFlowSet object to/from disk. |
| ncdfFlow | ncdfFlow: A package that provides CDF storage based flow cytometry data analysis. |
| ncdfFlowList | a class that stores multiple ncdfFlowSet objects |
| ncdfFlowList-class | a class that stores multiple ncdfFlowSet objects |
| ncdfFlowSet | create ncdfFlowSet from flowSet |
| ncdfFlowSet-class | a class for storing flow cytometry raw data in HDF5 format |
| ncdfFlowSet-method | create ncdfFlowSet from flowSet |
| ncfsApply | apply method for ncdfFlowSet (for internal use) |
| ncfsApply-method | apply method for ncdfFlowSet (for internal use) |
| pData-method | Accessors compatible with those for 'flowSet' |
| pData<--method | Accessors compatible with those for 'flowSet' |
| phenoData-method | Accessors compatible with those for 'flowSet' |
| phenoData<--method | Accessors compatible with those for 'flowSet' |
| rbind2-method | combine multiple ncdfFlowSet objects into one |
| read.ncdfFlowSet | create ncdfFlowSet from FCS files |
| read.ncdfFlowset | create ncdfFlowSet from FCS files |
| replacement method for ncdfFlowSet | write the flow data from a 'flowFrame' to 'ncdfFlowSet' |
| sampleNames-method | Accessors compatible with those for 'flowSet' |
| sampleNames<- | Accessors compatible with those for 'flowSet' |
| sampleNames<--method | Accessors compatible with those for 'flowSet' |
| save_ncfs | save/load a ncdfFlowSet object to/from disk. |
| show | a class for storing flow cytometry raw data in HDF5 format |
| show-method | a class that stores multiple ncdfFlowSet objects |
| show-method | a class for storing flow cytometry raw data in HDF5 format |
| split-method | split a 'ncdfFlowSet' object. |
| Subset-method | subset a ncdfFlowSet by filter |
| subset.ncdfFlowList | subset the ncdfFlowSet/ncdfFlowList based on 'pData' |
| subset.ncdfFlowSet | subset the ncdfFlowSet/ncdfFlowList based on 'pData' |
| transform-method | Accessors compatible with those for 'flowSet' |
| unlink-method | delete the cdf file associated with the ncdfFlowSet object |
| updateIndices | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| updateIndices-method | 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet |
| xyplot-method | flowViz plot methods. |
| [-method | subsetting by sampleNames,channels(not for events) methods |
| [[-method | extract a 'flowFrame' object from 'ncdfFlowSet' |
| [[<--method | write the flow data from a 'flowFrame' to 'ncdfFlowSet' |