Multiple omics data integration and gene set analysis

Documentation for package ‘mogsa’ version 1.0.3

mogsa-package	Multiple omics gene set analysis
annotate.gs	Summary annotation information of a gene set
box.gs.feature	boxplot of gene set variables across all samples.
combine	Combine two objects of class 'mgsa' into one.
combine-method	Combine two objects of class 'mgsa' into one.
combine-methods	Combine two objects of class 'mgsa' into one.
decompose.gs.group	Data-wise or PC-wise decomposition of gene set scores for all observations.
decompose.gs.ind	Data-wise or PC-wise decomposition of gene set scores for a single observation.
getmgsa	get values in an object of class "mgsa".
GIS	calculate gene influential scores of genes in a gene set.
matpower	compute the power of a matrix
mgsa-class	Class '"mgsa"'
moa	Multiple omics data analysis using MFA or STATIS
moa-class	Class '"moa"'
moa.sup-class	Class '"moa.sup"'
mogsa	multiple omics data integration and gene set analysis
NCI60_4arrays	Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
NCI60_4array_supdata	supp data for Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
pairwise.rv	pairwise RV coefficients.
plot-method	Class '"moa"'
plot-methods	~~ Methods for Function 'plot' ~~
plotGS	Plot the gene set space
prepGraphite	Prepare pathway gene sets from graphite package
prepMsigDB	Conver gmt format file to a list
prepSupMoa	Prepare sumpplementary tables for projection by sup.moa or mogsa.
sup.moa	Projecting supplementary tables on object of class 'moa-class'.
wsvd	Weighted singular value decomposition (SVD)