RUVadj                  Adjust estimated variances
RUVfit                  Remove unwanted variation when testing for
                        differential methylation
SWAN                    Subset-quantile Within Array Normalisation for
                        Illumina Infinium HumanMethylation450 BeadChips
contrasts.varFit        Compute contrasts for a varFit object.
densityByProbeType      Plot the beta value distributions of the
                        Infinium I and II probe types relative to the
                        overall beta value distribution.
getINCs                 Extract intensity data for 613 Illumina
                        negative controls found on 450k arrays.
getLeveneResiduals      Obtain Levene residuals
gometh                  Gene ontology testing for 450K methylation data
missMethyl-package      Introduction to the missMethyl package
topRUV                  Table of top-ranked differentially methylated
                        CpGs obatained from a differential methylation
                        analysis using RUV
topVar                  Table of top-ranked differentially variable
                        CpGs
varFit                  Testing for differential variability
