Phenotypes-class        Phenotypes
TargetRelations-class   TargetRelations
[,Phenotypes,ANY,ANY,ANY-method
                        Subsetting for Phenotype objects.
[,TargetRelations,ANY,ANY,ANY-method
                        Subsetting for TargetRelations objects.
annotate.gsp            annotate.gsp
as.data.frame,Phenotypes-method
                        Convert Phenotypes object to a data.frame
as.data.frame.concordance
                        Coerce method
c,Phenotypes-method     Concatenate Phenotypes objects
concordance             Evaluate the concordance between Phenotype
                        objects
gespeR-class            gespeR
gespeR-package          Package: Gene-Specific Phenotype EstimatoR
gsp                     Retrieve GSPs and SSPs from 'gespeR' objects
join                    join
lasso.rand              Randomized Lasso
loadValues              Methods for values of 'TargetRelations' objects
na.rem                  Remove NA/Inf values from phenotype vectors
path<-                  path
plot.Phenotypes         Plot method for Phenotype objects
plot.concordance        Plot concordance
plot.gespeR             Plot method for 'gespeR' objects
rbo                     Rank biased overlap (Webber et al., 2010)
scores                  scores
simData                 Example phenotype and target relations data A,
                        B, C, and D
stability               stability
stability.selection     Stability Selection
stabilityfits           Example fits for phenotypes from example
                        screening data A, B, C and D
target.relations        target.relations
values                  values
