Package: easyRNASeq
Version: 2.4.7
Date: 2015-07-09
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler
Maintainer: Nicolas Delhomme <delhomme@embl.de>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.28.0), BiocGenerics (>= 0.14.0), BiocParallel
        (>= 1.2.7), biomaRt (>= 2.24.0), Biostrings (>= 2.36.1), DESeq
        (>= 1.20.0), edgeR (>= 3.10.2), genomeIntervals (>= 1.24.1),
        GenomicAlignments (>= 1.4.1), GenomeInfoDb (>= 1.4.1),
        GenomicRanges (>= 1.20.5), graphics, IRanges (>= 2.2.5), LSD
        (>= 3.0), methods, parallel, Rsamtools (>= 1.20.4), S4Vectors
        (>= 0.6.1), ShortRead (>= 1.26.0), locfit, utils
Suggests: BiocStyle (>= 1.6.0), BSgenome (>= 1.36.2),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), GenomicFeatures (>=
        1.20.1), RnaSeqTutorial (>= 0.6.0), RUnit (>= 0.4.28)
License: Artistic-2.0
LazyLoad: yes
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing
NeedsCompilation: no
Packaged: 2015-07-15 03:55:38 UTC; biocbuild
Built: R 3.2.1; ; 2015-07-15 08:20:16 UTC; windows
