derfinder-package	derfinder-package
advancedArg	advancedArg
advanced_arg	advancedArg
analyzeChr	analyzeChr
analyze_chr	analyzeChr
annotateRegions	annotateRegions
annotate_regions	annotateRegions
calculatePvalues	calculatePvalues
calculateStats	calculateStats
calculate_pvalues	calculatePvalues
calculate_stats	calculateStats
coerceGR	coerceGR
coerce_gr	coerceGR
collapseFullCoverage	collapseFullCoverage
collapse_full_coverage	collapseFullCoverage
coverageToExon	coverageToExon
coverage_to_exon	coverageToExon
createBw	createBw
createBwSample	createBwSample
create_bw	createBw
create_bw_sample	createBwSample
extendedMapSeqlevels	extendedMapSeqlevels
extended_map_seqlevels	extendedMapSeqlevels
filterData	filterData
filter_data	filterData
findRegions	findRegions
find_regions	findRegions
fullCoverage	fullCoverage
full_coverage	fullCoverage
genomeData	genomeData
genomeDataRaw	genomeDataRaw
genomeFstats	genomeFstats
genomeInfo	genomeInfo
genomeRegions	genomeRegions
genomicState	genomicState
getRegionCoverage	getRegionCoverage
get_region_coverage	getRegionCoverage
loadCoverage	loadCoverage
load_coverage	loadCoverage
makeGenomicState	makeGenomicState
makeModels	makeModels
make_genomic_state	makeGenomicState
make_models	makeModels
mergeResults	mergeResults
merge_results	mergeResults
preprocessCoverage	preprocessCoverage
preprocess_coverage	preprocessCoverage
rawFiles	rawFiles
raw_files	rawFiles
regionMatrix	regionMatrix
region_matrix	regionMatrix
sampleDepth	sampleDepth
sample_depth	sampleDepth
