Package: derfinder
Type: Package
Title: Annotation-agnostic differential expression analysis of RNA-seq
        data at base-pair resolution
Version: 1.2.1
Date: 2015-06-11
Authors@R: c(person("Leonardo", "Collado-Torres", role = c("aut", "cre"), email
    = "lcollado@jhu.edu"), person(c("Alyssa", "C."), "Frazee", role = c("aut"),
    email = "alyssa.frazee@gmail.com"), person(c("Andrew", "E."), "Jaffe",
    role = "aut", email = "andrew.jaffe@libd.org"), person(c("Jeffrey", "T."),
    "Leek", role = c("aut", "ths"), email = "jtleek@gmail.com"))
Depends: R(>= 3.2)
Imports: AnnotationDbi (>= 1.27.9), BiocParallel, bumphunter (>=
        1.7.6), derfinderHelper (>= 1.1.0), GenomeInfoDb (>= 1.3.3),
        GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges
        (>= 1.17.40), Hmisc, IRanges (>= 1.99.28), qvalue (>= 1.99.0),
        Rsamtools, rtracklayer, S4Vectors (>= 0.2.3)
Suggests: biovizBase, devtools (>= 1.6), derfinderData (>= 0.99.0),
        ggplot2, knitcitations (>= 1.0.1), knitr (>= 1.6),
        knitrBootstrap (>= 0.9.0), rmarkdown (>= 0.3.3), testthat,
        TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
Description: This package provides functions for annotation-agnostic 
    differential expression analysis of RNA-seq data.
License: Artistic-2.0
LazyData: true
URL: https://github.com/lcolladotor/derfinder
BugReports: https://github.com/lcolladotor/derfinder/issues
biocViews: DifferentialExpression, Sequencing, RNASeq, Software
NeedsCompilation: no
Packaged: 2015-06-16 05:38:24 UTC; biocbuild
Author: Leonardo Collado-Torres [aut, cre],
  Alyssa C. Frazee [aut],
  Andrew E. Jaffe [aut],
  Jeffrey T. Leek [aut, ths]
Maintainer: Leonardo Collado-Torres <lcollado@jhu.edu>
Built: R 3.2.1; ; 2015-06-16 08:06:47 UTC; windows
