cytofkit: an integrated analysis pipeline for mass cytometry data

Documentation for package ‘cytofkit’ version 1.1.0

cytofkit-package	cytofkit: an integrated analysis pipeline for mass cytometry data
add_col_to_fcs	Add new columns to the fcs expression data
cluster_gridPlot	Grid scatter plot of the cluster results with multiple samples
cluster_plot	Scatter plot of the cluster results
clust_mean_heatmap	Heatmap plot of cluster mean value results
clust_percentage_heatmap	Heatmap plot of cluster percentage results
clust_state	Statistical analysis of the cluster results
cytofkit	cytofkit: an integrated analysis pipeline for mass cytometry data
cytof_dimReduction	Dimension reduction of CyTof expression data
cytof_tsne_densvm	CyTOF data analysis for subpopulation detection
cytof_tsne_densvm_GUI	The user friendly GUI for function 'cytof_tsne_densvm'
cytof_write_results	Save the cytofkit analysis results
densVM_cluster	Density-based local maxima cluster with SVM
fcs_lgcl	Transformation of the FCS data
fcs_lgcl_merge	merge the transformed expression data of FCS file(s) of selected markers
peaksGamma_plot	Plot varaition of peak nums with increasing gamma