# Generated by roxygen2 (4.1.1): do not edit by hand

S3method(ALLEXTID,BP)
S3method(ALLEXTID,CC)
S3method(ALLEXTID,KEGG)
S3method(ALLEXTID,MF)
S3method(EXTID2TERMID,BP)
S3method(EXTID2TERMID,CC)
S3method(EXTID2TERMID,KEGG)
S3method(EXTID2TERMID,MF)
S3method(TERM2NAME,BP)
S3method(TERM2NAME,CC)
S3method(TERM2NAME,KEGG)
S3method(TERM2NAME,MF)
S3method(TERMID2EXTID,BP)
S3method(TERMID2EXTID,CC)
S3method(TERMID2EXTID,KEGG)
S3method(TERMID2EXTID,MF)
S3method(getGeneSet,BP)
S3method(getGeneSet,CC)
S3method(getGeneSet,GO)
S3method(getGeneSet,KEGG)
S3method(getGeneSet,MF)
S3method(getGeneSet,USER_DEFINED)
export(GSEA)
export(Gff2GeneTable)
export(bitr)
export(buildGOmap)
export(cnetplot)
export(compareCluster)
export(enrichDAVID)
export(enrichGO)
export(enrichKEGG)
export(enrichMap)
export(enricher)
export(groupGO)
export(gseGO)
export(gseKEGG)
export(gseaplot)
export(idType)
export(plot)
exportClasses(compareClusterResult)
exportClasses(groupGOResult)
importClassesFrom(DOSE,enrichResult)
importClassesFrom(DOSE,gseaResult)
importClassesFrom(methods,data.frame)
importFrom(AnnotationDbi,Ontology)
importFrom(AnnotationDbi,as.list)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,mget)
importFrom(AnnotationDbi,select)
importFrom(DOSE,ALLEXTID)
importFrom(DOSE,EXTID2NAME)
importFrom(DOSE,EXTID2TERMID)
importFrom(DOSE,TERM2NAME)
importFrom(DOSE,TERMID2EXTID)
importFrom(DOSE,enrich.internal)
importFrom(DOSE,getGeneSet)
importFrom(DOSE,gseAnalyzer)
importFrom(DOSE,gsea)
importFrom(DOSE,setReadable)
importFrom(DOSE,theme_dose)
importFrom(GO.db,GOBPANCESTOR)
importFrom(GO.db,GOBPCHILDREN)
importFrom(GO.db,GOCCANCESTOR)
importFrom(GO.db,GOCCCHILDREN)
importFrom(GO.db,GOMFANCESTOR)
importFrom(GO.db,GOMFCHILDREN)
importFrom(GO.db,GOTERM)
importFrom(GOSemSim,getDb)
importFrom(GOSemSim,getSupported_Org)
importFrom(GOSemSim,loadGOMap)
importFrom(KEGGREST,keggLink)
importFrom(KEGGREST,keggList)
importFrom(ggplot2,"%+%")
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(plyr,.)
importFrom(plyr,ddply)
importFrom(plyr,dlply)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(plyr,mdply)
importFrom(plyr,rename)
importFrom(qvalue,qvalue)
importFrom(stats4,plot)
importMethodsFrom(AnnotationDbi,Ontology)
importMethodsFrom(AnnotationDbi,Term)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(DOSE,plot)
importMethodsFrom(DOSE,show)
importMethodsFrom(DOSE,summary)
