DataSet                 Datasets gcSample contains a sample of gene
                        clusters.
GSEA                    GSEA
Gff2GeneTable           Gff2GeneTable
bitr                    bitr
buildGOmap              buildGOmap
buildKEGGmap            buildKEGGmap
clusterProfiler-package
                        statistical analysis and visualization of
                        functional profiles for genes and gene clusters
                        The package implements methods to analyze and
                        visualize functional profiles of gene and gene
                        clusters.
cnetplot                cnetplot
compareCluster          Compare gene clusters functional profile
compareClusterResult-class
                        Class "compareClusterResult" This class
                        represents the comparison result of gene
                        clusters by GO categories at specific level or
                        GO enrichment analysis.
download.KEGG           download.KEGG
enrichDAVID             enrichDAVID
enrichGO                GO Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment GO categories after FDR control.
enrichKEGG              KEGG Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment KEGG categories with FDR control.
enrichMap               enrichMap
enricher                enricher
getGOLevel              get GOIDs at a specific level
groupGO                 Functional Profile of a gene set at specific GO
                        level. Given a vector of genes, this function
                        will return the GO profile at a specific level.
groupGOResult-class     Class "groupGOResult" This class represents the
                        result of functional Profiles of a set of gene
                        at specific GO level.
gseGO                   gseGO
gseKEGG                 gseKEGG
gseaplot                gseaplot
idType                  idType
plot                    plot method
plotting.clusterProfile
                        plotting-clusterProfile
viewKEGG                viewKEGG function is for visualize KEGG
                        pathways works with enrichResult object to
                        visualize enriched KEGG pathway
