Package: chipenrich
Type: Package
Title: Gene set enrichment for ChIP-seq peak data
Version: 1.6.1
Date: 2015-05-12
Authors@R: c(
  person(c("Ryan","P."),"Welch",role = c("aut","cre","cph"),email = "welchr@umich.edu"),
  person("Chee","Lee",role = c("aut","cre"),email = "cheelee@umich.edu"),
  person(c("Raymond","G."),"Cavalcante",role = c("aut","cre"),email = "rcavalca@umich.edu"),
  person(c("Laura","J."),"Scott",role = c("ths"), email = "ljst@umich.edu"),
  person(c("Maureen","A."),"Sartor",role = c("ths"),email = "sartorma@med.umich.edu"))
Description: ChIP-Enrich performs gene set enrichment testing
	using peaks called from a ChIP-seq experiment. The method empirically
	corrects for confounding factors such as the length of genes,
	and the mappability of the sequence surrounding genes.
biocViews: Software, Bioinformatics, Enrichment, GeneSetEnrichment
License: GPL-3
Imports: chipenrich.data, methods, GenomicRanges (>= 1.10.0), IRanges
        (>= 1.16.0), mgcv, plyr (>= 1.7.0), lattice, latticeExtra,
        grid, stringr (>= 0.6), rms
Depends: R (>= 2.15.1)
Enhances: parallel
LazyLoad: yes
Author: Ryan P. Welch [aut, cre, cph],
  Chee Lee [aut, cre],
  Raymond G. Cavalcante [aut, cre],
  Laura J. Scott [ths],
  Maureen A. Sartor [ths]
Maintainer: Ryan P. Welch <welchr@umich.edu>, Chee Lee <cheelee@umich.edu>, Raymond G. Cavalcante <rcavalca@umich.edu>
NeedsCompilation: no
Packaged: 2015-05-14 04:35:14 UTC; biocbuild
Built: R 3.2.0; ; 2015-05-14 07:09:25 UTC; windows
