Package: LowMACA
Type: Package
Title: LowMACA - Low frequency Mutation Analysis via Consensus
        Alignment
Version: 1.0.0
Date: 2015-02-20
Author: Stefano de Pretis , Giorgio Melloni
Maintainer: Stefano de Pretis <ste.depo@gmail.com>, Giorgio Melloni
 <melloni.giorgio@gmail.com>
Description: The LowMACA package is a simple suite of tools to
        investigate and analyze the mutation profile of several
        proteins or pfam domains via consensus alignment. You can
        conduct an hypothesis driven exploratory analysis using our
        package simply providing a set of genes or pfam domains of your
        interest.
License: GPL-3
Depends: R (>= 2.10), Biostrings, motifStack
Imports: cgdsr, parallel, stringr, reshape2, data.table, RColorBrewer,
        methods, LowMACAAnnotation
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: SomaticMutation, SequenceMatching, WholeGenome, Sequencing,
        Alignment, DataImport, MultipleSequenceAlignment
SystemRequirements: clustalo, gs, perl
NeedsCompilation: no
Packaged: 2015-04-17 05:55:14 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 10:17:38 UTC; windows
