Identification of Novel alternative PolyAdenylation Sites (PAS)

Documentation for package ‘InPAS’ version 1.0.6

InPAS-package	alternative polyadenylation and cleavage estimations
coverageFromBedGraph	read coverage from bedGraph files
CPsites	predict the cleavage and polyadenylation(CP) site
InPAS	alternative polyadenylation and cleavage estimations
inPAS	do estimation of alternative polyadenylation and cleavage site in one step
usage4plot	prepare coverage data and fitting data for plot
utr3.hg19	3'UTR annotation for hg19 obtained from utr3Annotation
utr3.mm10	3'UTR annotation for mm10 obtained from utr3Annotation
utr3Annotation	extract 3'UTR from TxDb object
utr3UsageEstimation	estimation of 3'UTR usage for each region