#Import packages dependencies
#import(foreach)
#import(GenomicFeatures)
importFrom(doParallel,registerDoParallel)
importFrom(lme4,glmer)
importFrom(foreach,foreach,"%dopar%")
importFrom(AnnotationDbi,select)
importFrom(GenomicFeatures,makeTranscriptDbFromGFF,exonsBy,intronsByTranscript,isActiveSeq,"isActiveSeq<-")
importFrom(GenomicRanges,GRanges,elementMetadata)
importFrom(IRanges,IRanges,findOverlaps)
importFrom(BiocGenerics,strand)
importFrom(GenomeInfoDb,seqinfo,seqlevels)
importMethodsFrom(Matrix,as.matrix)
importMethodsFrom(BiocGenerics,unlist)
importMethodsFrom(S4Vectors,Rle)


#Export all names
export(calSignificant,chrseparate,findAlternative,findOversnp,MsqtlFinder,saveBplot,sqtlfinder)

