bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
73cb8236f468ad488fd1d7710e454861 *DESCRIPTION
c1e3200dd3dceadbf0a617a16b43875c *INDEX
d433ea2b064ffc6047f9e67f3aff0e20 *Meta/Rd.rds
e1741e13746a1e44d8cc80821362fe15 *Meta/hsearch.rds
d0d1b95f1a7a6617eb329704cf931578 *Meta/links.rds
21e8492409bddcda8ffae2679921f5a1 *Meta/nsInfo.rds
ee9959f5ca322d7f12d51251c72eb415 *Meta/package.rds
8447a72cca9831b406e5659a1422ed4e *Meta/vignette.rds
4c3df286c117b013f669e90b4c423020 *NAMESPACE
b170a6c59051fd7079baed757be5ef16 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
6d931eb89b9b4fbdee5bde2e6c6fd7fe *R/GenomicAlignments.rdb
708c35688ad594cb60ed864a195f4a82 *R/GenomicAlignments.rdx
6edf98635065bb41de8ea10f9c870032 *doc/OverlapEncodings.R
c115a9eb257de3881eca9fdfbc0784df *doc/OverlapEncodings.Rnw
d473ae3bf29a91d2b8f5011a2ae6cfab *doc/OverlapEncodings.pdf
fefe6ab83378e1021ae62b51ca854ef2 *doc/WorkingWithAlignedNucleotides.R
7ffa5eec2eb7b955ca22579bb869bff8 *doc/WorkingWithAlignedNucleotides.Rnw
1d2903867e5a8a40fc00945870d48d2a *doc/WorkingWithAlignedNucleotides.pdf
0758b4713fb971a8d5d9936d67898f21 *doc/index.html
1db3b1c017fe4cd644c6e44d96816ad2 *doc/summarizeOverlaps.R
43227b456a35c52e6636caba03951f02 *doc/summarizeOverlaps.Rnw
1535f5adf0ee9953e7fb0eba4f159cfb *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
04d859349cb35c7d1e19e9cd55bf2ffb *help/AnIndex
73aa2197ee5f2554412a18c235083e86 *help/GenomicAlignments.rdb
3540aae1facf8516e680c175ebd7d474 *help/GenomicAlignments.rdx
6f9b127d6d970c6c657092f7359f8b91 *help/aliases.rds
ca6121033f290efe9bf1287cf0b81847 *help/paths.rds
7c876508700b3e3ccbe2a20b6f903d75 *html/00Index.html
0629445e5f3de06acbaf6e4013c7deca *html/R.css
686db433cc7c29e0801c5cbc393e6dfe *libs/i386/GenomicAlignments.dll
bcfb84fd6243e30356d8ba1e70710f55 *libs/x64/GenomicAlignments.dll
006658c9b51f09d15581526e4c1b8d30 *unitTests/test_GAlignments-class.R
fe4c3096b938b5bf4a003a5b942edfc6 *unitTests/test_GAlignmentsList-class.R
8ebc949e316f84ed21c18fdf971de87f *unitTests/test_cigar-utils.R
c494127673b074fbd5bbecb4b5fe80f3 *unitTests/test_coordinate-mapping-methods.R
0297704686379bd374bc14d19e6fd61d *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
03e3aefe667c4a851e43e16924d8f517 *unitTests/test_readGAlignments.R
bddfe82469b8e2201af6546b8ca9fd06 *unitTests/test_readGAlignmentsList.R
c7ae29d166b57d76607d473fc14ec37d *unitTests/test_summarizeOverlaps-methods.R
