# GGBase infrastructure for genetics of gene expression package GGtools

## Documentation for package ‘GGBase’ version 3.30.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

allsnps | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints
casting | Class '"rsid"'
clipPCs | transformations of expression data in smlSet instances
clipPCs-method | transformations of expression data in smlSet instances
combine-method | Class '"smlSet"'
dropMonomorphies | Filter genotype contents of an smlSet according to certain SNP allele frequency features.
exprs-method | Class '"smlSet"'
externalize | create a package with a decomposed smlSet instance from a unified smlSet instance, to reduce memory footprints
genesym | Class '"rsid"'
genesym-class | Class '"rsid"'
genesym-method | Class '"rsid"'
getSS | construct an smlSet instance from existing resources
GTFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features.
MAFfilter | Filter genotype contents of an smlSet according to certain SNP allele frequency features.
make_smlSet | construct an smlSet instance from existing resources
nsFilter-method | Class '"smlSet"'
permEx | Class '"smlSet"'
permEx-method | Class '"smlSet"'
plot_EvG | display the association between expression values and genotypes in an smlSet instance
plot_EvG-method | display the association between expression values and genotypes in an smlSet instance
probeId | Class '"rsid"'
probeId-class | Class '"rsid"'
probeId-method | Class '"rsid"'
regressOut | transformations of expression data in smlSet instances
rsid | Class '"rsid"'
rsid-class | Class '"rsid"'
rsid-method | Class '"rsid"'
smList | Class '"smlSet"'
smList-method | Class '"smlSet"'
smlSet-class | Class '"smlSet"'
[-method | Class '"smlSet"'