Using self-organizing maps for visualization and interpretation of cytometry data

Documentation for package ‘FlowSOM’ version 1.0.0

AggregateFlowFrames	Aggregate multiple fcs files together
BuildMST	Build Minimal Spanning Tree
BuildSOM	Build a self-organizing map
CountGroups	Compute differences between groups
FlowSOM	Run the FlowSOM algorithm
FlowSOMSubset	FlowSOM subset
FMeasure	FMeasure of a clustering result
MetaClustering	MetaClustering
metaClustering_consensus	MetaClustering
NewData	Map new data to a FlowSOM grid
PlotCenters	Plot cluster centers on a 2D plot
PlotClusters2D	Plot nodes on scatter plot
PlotGroups	Plot differences between groups
PlotMarker	Plot marker values
PlotPies	Plot comparison with other clustering
PlotStars	Plot star charts
Purity	Purity of a clustering result
ReadInput	Read fcs-files or flowframes
UpdateNodeSize	Update nodesize of FlowSOM object