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| ENCODExplorer-package | ENCODExplorer |
| clean_table | Clean a data.frame that was produced by extract_table |
| downloadEncode | Download files from the Internet. |
| ENCODExplorer | ENCODExplorer |
| encode_df | Metadata from the ENCODE database in a R object. The tables were generated with the 'prepare_ENCODEdb' function. |
| export_ENCODEdb_matrix | Extract essential informations from the RSQLite databse in a 'list' of 'data.frame's |
| extract_table | Extract a data.frame corresponding to a table in ENCODE database |
| get_encode_types | A list of known tables from ENCODE database. |
| get_schemas | Extract the schemas from ENCODE's github |
| prepare_ENCODEdb | Create the RSQLite databse for the tables in ENCODE |
| queryEncode | Produce a subset of data following predefined criteria |
| searchEncode | Simulate a query on ENCODE website and return the result as a 'data.frame' |