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| ComplexHeatmap-package | Making complex heatmap |
| +.AdditiveUnit | Add heatmaps or row annotations to a heatmap list |
| AdditiveUnit | Constructor method for AdditiveUnit class |
| AdditiveUnit-class | An internal class |
| add_heatmap | Method dispatch page for add_heatmap |
| add_heatmap-method | Add heatmaps or row annotations as a heatmap list |
| add_heatmap-method | Add row annotations or heatmaps as a heatmap list |
| add_heatmap-method | Add heatmaps and row annotations to the heatmap list |
| annotation_legend_size | Size of the annotation legend viewport |
| annotation_legend_size-method | Size of the annotation legend viewport |
| anno_barplot | Using barplot as annotation |
| anno_boxplot | Using boxplot as annotation |
| anno_density | Using kernel density as annotation |
| anno_histogram | Using histogram as annotation |
| anno_points | Using points as annotation |
| ColorMapping | Constructor methods for ColorMapping class |
| ColorMapping-class | Class to map values to colors |
| color_mapping_legend | Draw legend based on color mapping |
| color_mapping_legend-method | Draw legend based on color mapping |
| component_height | Method dispatch page for component_height |
| component_height-method | Height of each heatmap component |
| component_height-method | Height of each heatmap list component |
| component_width | Method dispatch page for component_width |
| component_width-method | Width of each heatmap component |
| component_width-method | Width of each heatmap list component |
| dist2 | Calculate distance from a matrix |
| draw | Method dispatch page for draw |
| draw-method | Draw a single heatmap |
| draw-method | Draw the heatmap annotations |
| draw-method | Draw a list of heatmaps |
| draw-method | Draw the single annotation |
| draw_annotation | Draw column annotations |
| draw_annotation-method | Draw column annotations |
| draw_annotation_legend | Draw legends for all column annotations |
| draw_annotation_legend-method | Draw legends for all column annotations |
| draw_dimnames | Draw row names or column names |
| draw_dimnames-method | Draw row names or column names |
| draw_hclust | Draw dendrogram on row or column |
| draw_hclust-method | Draw dendrogram on row or column |
| draw_heatmap_body | Draw the heatmap body |
| draw_heatmap_body-method | Draw the heatmap body |
| draw_heatmap_legend | Draw legends for all heatmaps |
| draw_heatmap_legend-method | Draw legends for all heatmaps |
| draw_heatmap_list | Draw the list of heatmaps |
| draw_heatmap_list-method | Draw the list of heatmaps |
| draw_title | Method dispatch page for draw_title |
| draw_title-method | Draw heatmap title |
| draw_title-method | Draw heatmap list title |
| get_color_mapping_list | Get a list of color mapping objects |
| get_color_mapping_list-method | Get a list of color mapping objects |
| grid.dendrogram | Draw dendrogram under grid system |
| Heatmap | Constructor method for Heatmap class |
| Heatmap-class | Class for a single heatmap |
| HeatmapAnnotation | Constructor method for HeatmapAnnotation class |
| HeatmapAnnotation-class | Class for heatmap annotations |
| HeatmapList | Constructor method for HeatmapList class |
| HeatmapList-class | Class for a list of heatmaps |
| heatmap_legend_size | Size of the heatmap legend viewport |
| heatmap_legend_size-method | Size of the heatmap legend viewport |
| make_column_cluster | Make cluster on columns |
| make_column_cluster-method | Make cluster on columns |
| make_layout | Method dispatch page for make_layout |
| make_layout-method | Make the layout of a single heatmap |
| make_layout-method | Make layout for the complete plot |
| make_row_cluster | Make cluster on rows |
| make_row_cluster-method | Make cluster on rows |
| map_to_colors | Map values to colors |
| map_to_colors-method | Map values to colors |
| prepare | Prepare the heatmap |
| prepare-method | Prepare the heatmap |
| set_component_height | Set height of each heatmap component |
| set_component_height-method | Set height of each heatmap component |
| show | Method dispatch page for show |
| show-method | Print ColorMapping object |
| show-method | Draw the single heatmap with default parameters |
| show-method | Print the Heatmap Annotation object |
| show-method | Draw a list of heatmaps with default parameters |
| show-method | Print the SingleAnnotation object |
| SingleAnnotation | Constructor method for SingleAnnotation class |
| SingleAnnotation-class | Class for a single annotation |