bubbletree              BubbleTree: a method to elucidate purity and
                        clonality in tumors using copy number ratio and
                        allele frequency.
calc.prev               Calculate tumor cell prevalence in a sample, an
                        indication of sample purity
cnv.gr                  A sample dataset of tumor segmented copy number
                        variations
compareBubbles          compare bubbles from two samples
drawBranches            Plot branches of BubbleTree plot
drawBubble              Draw a bubble
getRBD                  Get RBD (R-score BAF Dataframe) of the
                        homogeneous SCNV segments
hcc.rbd.lst             Rbd data from the HCC samples
hetero.gr               BAF of the germline heterozygous loci in
                        GRanges format
plotBubbles             Plot Bubbles
