A method to elucidate purity and clonality in tumors using copy number ratio and allele frequency

Documentation for package ‘BubbleTree’ version 1.0.0

bubbletree-package	BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency.
addBubble	Draw a bubble
BubbleTree	BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency.
bubbletree	BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency.
calc.prev	Calculate tumor cell prevalence in a sample, an indication of sample purity
cnv.gr	A sample dataset of tumor segmented copy number variations
compareBubbles	compare bubbles from two samples
drawBranches	Plot branches of BubbleTree plot
drawBubble	Draw a bubble
getRBD	Get RBD (R-score BAF Dataframe) of the homogeneous SCNV segments
hcc.rbd.lst	Rbd data from the HCC samples
hetero.gr	BAF of the germline heterozygous loci in GRanges format
plotBubbles	Plot Bubbles