Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.8.0
Date: 2015-04-01
Author: Katja Hebestreit, Hans-Ulrich Klein
Maintainer: Katja Hebestreit <katjah@stanford.edu>
Depends: R (>= 2.15.2), methods, S4Vectors, IRanges (>= 1.17.24),
        GenomicRanges, Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges,
        GenomeInfoDb, GenomicRanges, rtracklayer, parallel, betareg,
        lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to
        handle and analyze targeted bisulfite sequencing (BS) data such
        as reduced-representation bisulfite sequencing (RRBS) data. In
        particular, it implements an algorithm to detect differentially
        methylated regions (DMRs). The package takes already aligned BS
        data from one or multiple samples.
License: LGPL-3
biocViews: Genetics, Sequencing, MethylSeq, DNAMethylation
NeedsCompilation: no
Packaged: 2015-04-17 04:28:50 UTC; biocbuild
Built: R 3.2.0; ; 2015-04-17 06:52:43 UTC; windows
