Package: BSgenome.Mmulatta.UCSC.rheMac2.masked
Title: Full masked genome sequences for Macaca mulatta (UCSC version
        rheMac2)
Description: Full genome sequences for Macaca mulatta (Rhesus) as
        provided by UCSC (rheMac2, Jan. 2006) and stored in Biostrings
        objects. The sequences are the same as in
        BSgenome.Mmulatta.UCSC.rheMac2, except that each of them has
        the 4 following masks on top: (1) the mask of assembly gaps
        (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB
        mask), (3) the mask of repeats from RepeatMasker (RM mask), and
        (4) the mask of repeats from Tandem Repeats Finder (TRF mask).
        Only the AGAPS and AMB masks are "active" by default.  NOTE: In
        most assemblies available at UCSC, Tandem Repeats Finder
        repeats were filtered to retain only the repeats with period <=
        12.  However, the filtering was omitted for this assembly, so
        the TRF masks contain all Tandem Repeats Finder results.
Version: 1.3.99
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
        <maintainer@bioconductor.org>
Depends: BSgenome (>= 1.31.8), BSgenome.Mmulatta.UCSC.rheMac2
Imports: BSgenome, BSgenome.Mmulatta.UCSC.rheMac2
License: Artistic-2.0
organism: Macaca mulatta
species: Rhesus
provider: UCSC
provider_version: rheMac2
release_date: Jan. 2006
release_name: Baylor College of Medicine HGSC v1.0 Mmul_051212
source_url: http://hgdownload.cse.ucsc.edu/goldenPath/rheMac2/
biocViews: AnnotationData, Genetics, BSgenome, Macaca_mulatta
Packaged: 2014-01-08 20:13:53 UTC; hpages
Built: R 3.1.0; ; 2014-04-17 00:54:57 UTC; windows
