roar-package	roar-package
checkStep	checkStep-method
combineFisherMethod	combineFisherMethod-method
computePairedPvals	computePairedPvals-method
computePairedPvals,RoarDataset,numeric,numeric-method	RoarDataset-class
computePvals	computePvals-method
computePvals,RoarDataset-method	RoarDataset-class
computeRoars	computeRoars-method
computeRoars,RoarDataset-method	RoarDataset-class
cores	cores-method
cores,RoarDataset-method	RoarDataset-class
countPrePost	countPrePost-method
countPrePost,RoarDataset,logical-method	RoarDataset-class
countPrePost,RoarDataset-method	RoarDataset-class
countResults	countResults-method
countResults,RoarDataset-method	RoarDataset-class
fpkmResults	fpkmResults-method
fpkmResults,RoarDataset-method	RoarDataset-class
getFisher	getFisher-method
meanAcrossAssays	meanAcrossAssays-method
pvalueCorrectFilter	pvalueCorrectFilter-method
pvalueCorrectFilter,RoarDataset,numeric,numeric,character-method	RoarDataset-class
pvalueFilter	pvalueFilter-method
pvalueFilter,RoarDataset,numeric,numeric-method	RoarDataset-class
roar	roar-package
RoarDataset	RoarDataset-constructor
RoarDataset-class	RoarDataset-class
RoarDatasetFromFiles	RoarDatasetFromFiles-constructor
standardFilter	standardFilter-method
standardFilter,RoarDataset,numeric-method	RoarDataset-class
totalResults	totalResults-method
totalResults,RoarDataset-method	RoarDataset-class
