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| flowMatch-package | Flow cytometry data cross-sample comparison |
| crossMap-class | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| FRmapping | Multiple sample comparison with a user-defined reference |
| FRmappingSimple | Multiple sample comparisons |
| FRstats-class | FR statistics and p-values generated from one single draw of the population pair comparison |
| FRvalsPerm-class | Statistics generated from the permuted distribution of the observed FR statistics |
| getCrossList | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getCrossList-method | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFR | F-R test for one population comparison |
| getFRest | F-R statistic estimates across two samples |
| getFRmapPnorms | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmapPnorms-method | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmapPnulls | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmapPnulls-method | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmapStats | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmapStats-method | Statistics of mapping the test samples and the reference sample (or the proxy reference) |
| getFRmat | F-R tests for two-sampbetween two samples |
| getFRstats | FR statistics and p-values generated from one single draw of the population pair comparison |
| getFRstats-method | FR statistics and p-values generated from one single draw of the population pair comparison |
| getFRvalsPerm | Compute statistics for the empirical distribution |
| getMatched | Identify matched population pairs |
| getMatchMat | Matching information about a single cross-sample comparison |
| getMatchMat-method | Matching information about a single cross-sample comparison |
| getMatchPairs | Matching information about a single cross-sample comparison |
| getMatchPairs-method | Matching information about a single cross-sample comparison |
| getNewPops | Data and summary information of the proxy reference sample |
| getNewPops-method | Data and summary information of the proxy reference sample |
| getPairList | Information required to making a proxy reference sample |
| getPairList-method | Information required to making a proxy reference sample |
| getPnorm | FR statistics and p-values generated from one single draw of the population pair comparison |
| getPnorm-method | FR statistics and p-values generated from one single draw of the population pair comparison |
| getPnulls | Statistics generated from the permuted distribution of the observed FR statistics |
| getPnulls-method | Statistics generated from the permuted distribution of the observed FR statistics |
| getPopFilt | List of population pairs to be compared during multiple-sample comparisons |
| getPopFilt-method | List of population pairs to be compared during multiple-sample comparisons |
| getRefData | Data and summary information of the proxy reference sample |
| getRefData-method | Data and summary information of the proxy reference sample |
| getSampleInfo | List of directories and sample files |
| getSampleInfo-method | List of directories and sample files |
| getSomePops | Make prefiltering matrix for each test sample |
| getWnulls | Statistics generated from the permuted distribution of the observed FR statistics |
| getWnulls-method | Statistics generated from the permuted distribution of the observed FR statistics |
| makeCrossMap | Make mapping information for the meta set of populations |
| makeRefMap | Make mapping information for the proxy reference sample |
| makeRefSample | Make a proxy reference sample |
| makeSampleInfo | Prepare background files to downstream data processing |
| matchMat-class | Matching information about a single cross-sample comparison |
| permutePops | Permute cell population labels across two samples |
| refMap-class | Information required to making a proxy reference sample |
| refSample-class | Data and summary information of the proxy reference sample |
| SampleInfo-class | List of directories and sample files |
| somePops-class | List of population pairs to be compared during multiple-sample comparisons |
| statCrossLists | summary statistic across elements of lists |