Package: cummeRbund
Title: Analysis, exploration, manipulation, and visualization of
        Cufflinks high-throughput sequencing data.
Version: 2.8.2
Date: 2013-04-22
Author: L. Goff, C. Trapnell, D. Kelley
Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data.  In addition, provides numerous plotting functions for commonly used visualizations.
Imports: methods, plyr, BiocGenerics, Biobase
Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite (>= 1.0.0),
        ggplot2, reshape2, fastcluster, rtracklayer, Gviz
Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges,
        rjson
Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
License: Artistic-2.0
Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R
        methods-CuffData.R methods-CuffDist.R methods-CuffGeneSet.R
        methods-CuffFeatureSet.R methods-CuffGene.R
        methods-CuffFeature.R tools.R
LazyLoad: yes
biocViews: Sequencing, RNASeq, GeneExpression, DifferentialExpression,
        Infrastructure, DataImport, DataRepresentation, Visualization,
        Clustering, MultipleComparison, QualityControl
Packaged: 2014-11-04 04:20:14 UTC; biocbuild
Built: R 3.1.2; ; 2014-11-04 08:13:36 UTC; windows
