$,readParam-method	readParam
asDGEList	SEmethods
asDGEList,SummarizedExperiment-method	SEmethods
average	SEmethods
average,SummarizedExperiment-method	SEmethods
combineTests	combineTests
correlateReads	correlateReads
csawUsersGuide	csawUsersGuide
detailRanges	detailRanges
extractReads	extractReads
getBestTest	getBestTest
getPETSizes	getPETSizes
mergeWindows	mergeWindows
normalize	SEmethods
normalize,SummarizedExperiment-method	SEmethods
normalizeCounts	normalizeCounts
readParam	readParam
readParam-class	readParam
reform	readParam
reform,readParam-method	readParam
regionCounts	regionCounts
show,readParam-method	readParam
windowCounts	windowCounts
