combineTests            Combine statistics across multiple tests
correlateReads          Compute correlation coefficients between reads
csawUsersGuide          View csaw user's guide
detailRanges            Add annotation to ranges
extractReads            Extract reads from a BAM file
getBestTest             Get the best test in a cluster
getPETSizes             Compute fragment lengths for paired-end tags
mergeWindows            Merge windows into clusters
normalize,SummarizedExperiment-method
                        Statistical wrappers for SummarizedExperiment
                        objects
normalizeCounts         Normalize counts between libraries
readParam               readParam class and methods
regionCounts            Count reads overlapping each region
windowCounts            Count reads overlapping each window
