RUNIT TEST PROTOCOL--Fri Dec 12 06:36:29 2014

Number of test functions: 19

Number of errors: 0

Number of failures: 0

1 Test suite

Details

Test Suite: VanillaICE unit testing

• Test file: test_ArrayViews.R
  • test_ArrayViews: (10 checks) ... OK (8.81 seconds)
    
  • test_columnSubset: (1 checks) ... OK (0.19 seconds)
    
• Test file: test_FilterParam.R
  • test_FilterParam: (1 checks) ... OK (0.01 seconds)
    
• Test file: test_HmmParam.R
  • test_EmissionParam: (3 checks) ... OK (0.01 seconds)
    
• Test file: test_hmm.R
  • test_hmm_cnset: (2 checks) ... OK (7.37 seconds)
    
  • test_oligoSnpSetGT: (1 checks) ... OK (2 seconds)
    
  • test_state4: (2 checks) ... OK (2.41 seconds)
    
• Test file: test_oligoSetList.R
  • test_oligoSetList: (2 checks) ... OK (1.31 seconds)
    
• Test file: test_viterbi.R
  • test_SnpArrayExperiment: (18 checks) ... OK (0.36 seconds)
    
  • test_Viterbi: (4 checks) ... OK (0 seconds)
    
  • test_baf_emission: (3 checks) ... OK (0.07 seconds)
    
  • test_cn_NAs: (3 checks) ... OK (0.09 seconds)
    
  • test_emission_for_list: (3 checks) ... OK (0.16 seconds)
    
  • test_emission_update: (3 checks) ... OK (0.68 seconds)
    
  • test_multiple_chromosomes: (2 checks) ... OK (1.54 seconds)
    
  • test_null_assignment: (2 checks) ... OK (0.71 seconds)
    
  • test_oligoset_comparison: (1 checks) ... OK (0.24 seconds)
    
  • test_summarized_exp: (1 checks) ... OK (0.08 seconds)
    
  • test_updating: (4 checks) ... OK (0.11 seconds)