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| STATegRa-package | STATegRa |
| bioDist | bioDist |
| bioDist-method | bioDist |
| bioDistclass | bioDistclass |
| bioDistclass-class | bioDistclass |
| bioDistclass-constructor | bioDistclass |
| bioDistFeature | bioDistFeature |
| bioDistFeature-method | bioDistFeature |
| bioDistFeaturePlot | bioDistFeaturePlot |
| bioDistW | bioDistW |
| bioDistW-method | bioDistW |
| bioDistWPlot | bioDistWPlot |
| bioDistWPlot-method | bioDistWPlot |
| bioMap | bioMap constructor |
| bioMap-class | bioMap class |
| bioMap-constructor | bioMap constructor |
| biplotRes | Biplot results of Components Analysis |
| biplotRes-method | Biplot results of Components Analysis |
| Block1 | STATegRa_initial_data |
| Block1.PCA | STATegRa_initial_data |
| Block2 | STATegRa_initial_data |
| Block2.PCA | STATegRa_initial_data |
| caClass-class | caClass |
| class:bioDistclass | bioDistclass |
| class:bioMap | bioMap class |
| class:caClass | caClass |
| createOmicsExpressionSet | Create an ExpressionSet object since omics dataset. |
| createOmicsExpressionSet-method | Create an ExpressionSet object since omics dataset. |
| ed | STATegRa_initial_data |
| ed.PCA | STATegRa_initial_data |
| getInitialData | Retrieve Initial data from caClass objects |
| getInitialData-method | Retrieve Initial data from caClass objects |
| getLoadings | Retrieve information about the loadings obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| getLoadings-method | Retrieve information about the loadings obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| getMethodInfo | Retrieve information about the components analysis done using 'omicsCompAnalysis' from an 'caClass-class' |
| getMethodInfo-method | Retrieve information about the components analysis done using 'omicsCompAnalysis' from an 'caClass-class' |
| getPreprocessing | Retrieve information about the preprocessing done in 'omicsCompAnalysis' from an 'caClass-class' |
| getPreprocessing-method | Retrieve information about the preprocessing done in 'omicsCompAnalysis' from an 'caClass-class' |
| getScores | Retrieve information about the scores obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| getScores-method | Retrieve information about the scores obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| getVAF | Retrieve information about the VAF obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| getVAF-method | Retrieve information about the VAF obtained using 'omicsCompAnalysis' from an 'caClass-class' |
| mapdata | STATegRa_initial_data |
| modelSelection | Number of optimal common and distinctive components in object-wise data |
| modelSelection-method | Number of optimal common and distinctive components in object-wise data |
| omicsCompAnalysis | Components analysis for the analysis of object wise data |
| omicsCompAnalysis-method | Components analysis for the analysis of object wise data |
| PCA.selection | Selection of optimal number of components using PCA |
| PCA.selection-method | Selection of optimal number of components using PCA |
| plotRes | Plot results of Components Analysis |
| plotRes-method | Plot results of Components Analysis |
| plotVAF | Function to plot the VAF (Variance Explained For) obtained from Component Analysis. |
| plotVAF-method | Function to plot the VAF (Variance Explained For) obtained from Component Analysis. |
| selectCommonComps | Select common components of two blocks of object wise omics data. |
| selectCommonComps-method | Select common components of two blocks of object wise omics data. |
| STATegRa | STATegRa |
| STATegRaUsersGuide | View STATegRa User's Guide |
| STATegRa_initial_data | STATegRa_initial_data |