Package: MinimumDistance
Type: Package
Title: A package for de novo CNV detection in case-parent trios
Version: 1.10.2
Date: Mon Oct 20 14:52:30 EDT 2014
Author: Robert B Scharpf and Ingo Ruczinski
Maintainer: Robert B Scharpf <rscharpf@jhu.edu>
Description: Analysis of de novo copy number variants in trios from
    high-dimensional genotyping platforms
License: Artistic-2.0
Depends: R (>= 3.01)
Imports: oligoClasses, S4Vectors, VanillaICE (>= 1.28.1), Biobase,
        DNAcopy, BiocGenerics, ff, foreach, matrixStats, IRanges,
        lattice, GenomicRanges (>= 1.18.1), GenomeInfoDb, data.table,
        grid
Suggests: human610quadv1bCrlmm (>= 1.0.3), SNPchip, RUnit
Collate: 'help.R' 'AllClasses.R' 'AllGenerics.R' 'coercion-methods.R'
        'datasets.R' 'defunct.R' 'functions.R' 'generator-funs.R'
        'lattice-methods.R' 'mad-methods.R'
        'methods-AnnotatedDataFrame.R' 'methods-AssayData.R'
        'methods-FileViews.R' 'methods-FilterParamMD.R'
        'methods-ILimit.R' 'methods-MDRanges.R'
        'methods-MinDistExperiment.R' 'methods-MinDistGRanges.R'
        'methods-MinDistParam.R' 'methods-MinDistPosterior.R'
        'methods-ParentOffspring.R' 'methods-ParentOffspringList.R'
        'methods-Pedigree.R' 'methods-PennParam.R'
        'methods-ShallowSimpleList.R' 'methods-SummarizedExperiment.R'
        'methods-TrioSet.R' 'methods-TrioSetList.R'
        'methods-ff_array.R' 'methods-grid.R' 'methods-list.R'
        'methods-matrix.R' 'segment2-methods.R' 'utils.R' 'zzz.R'
Enhances: snow, doSNOW
LazyLoad: yes
Packaged: 2015-02-12 04:43:30 UTC; biocbuild
biocViews: Microarray, SNP, CopyNumberVariation
## Local Variables:
## time-stamp-pattern: "8/Date: %3a %3b %2d %02H:%02M:%02S %Z %:y\n"
## End:
Built: R 3.1.2; ; 2015-02-12 11:23:46 UTC; windows
