Package: MethylMix
Version: 1.0.0
Date: 2014-08-25
Type: Package
Title: MethylMix: Identifying methylation driven cancer genes.
Author: Olivier Gevaert
Maintainer: Olivier Gevaert <olivier.gevaert@gmail.com>
Description: MethylMix is an algorithm implemented to identify hyper
        and hypomethylated genes for a disease. MethylMix is based on a
        beta mixture model to identify methylation states and compares
        them with the normal DNA methylation state. MethylMix uses a
        novel statistic, the Differential Methylation value or DM-value
        defined as the difference of a methylation state with the
        normal methylation state. Finally, matched gene expression data
        is used to identify, besides differential, functional
        methylation states by focusing on methylation changes that
        effect gene expression.
License: GPL-2
LazyLoad: yes
Depends: R (>= 3.1.1)
Imports: foreach,parallel,doParallel,RColorBrewer,optimx,RPMM
biocViews:
        DNAMethylation,StatisticalMethod,DifferentialMethylation,GeneRegulation,GeneExpression,MethylationArray,
        DifferentialExpression, Pathways, Network
Suggests: BiocStyle
Packaged: 2014-10-14 05:21:25 UTC; biocbuild
Built: R 3.1.1; ; 2014-10-14 10:38:30 UTC; windows
