Seamless navigation through combined results of set-based and network-based enrichment analysis

Documentation for package ‘EnrichmentBrowser’ version 1.0.3

comb.ea.results	Combining enrichment analysis results
compile.grn.from.kegg	Compilation of a gene regulatory network from KEGG pathways
de.ana	Differential expression analysis between two sample groups
download.kegg.pathways	Download of KEGG pathways for a particular organism
ea.browse	Exploration of enrichment analysis results
ebrowser	Seamless navigation through enrichment analysis results
exprs.heatmap	Visualization of gene expression
get.kegg.genesets	Definition of gene sets according to KEGG pathways for a specified organism
ggea	Network-based enrichment analysis (NBEA)
ggea.graph	GGEA graphs of consistency between regulation and expression
ggea.graph.legend	GGEA graphs of consistency between regulation and expression
gs.ranking	Exploration of enrichment analysis results
gsea	Set-based enrichment analysis (SBEA)
nbea	Network-based enrichment analysis (NBEA)
nbea.methods	Network-based enrichment analysis (NBEA)
ora	Set-based enrichment analysis (SBEA)
parse.genesets.from.GMT	Definition of gene sets according to KEGG pathways for a specified organism
pdistr	Visualization of gene expression
probe.2.gene.eset	Transformation of probe level expression to gene level expression
read.eset	Reading gene expression data from file into an expression set
sbea	Set-based enrichment analysis (SBEA)
sbea.methods	Set-based enrichment analysis (SBEA)
volcano	Visualization of gene expression