adjustScvForBias	adjustScvForBias
conditions	conditions
conditions,CountDataSet-method	conditions
conditions<-,CountDataSet-method	conditions
CountDataSet-class	CountDataSet-class
counts	counts
counts,CountDataSet-method	counts
counts<-,CountDataSet,matrix-method	counts
dispTable	dispTable
dispTable,CountDataSet-method	dispTable
estimateDispersions	estimateDispersions
estimateDispersions,CountDataSet-method	estimateDispersions
estimateSizeFactors	estimateSizeFactors
estimateSizeFactors,CountDataSet-method	estimateSizeFactors
estimateSizeFactorsForMatrix	estimateSizeFactorsForMatrix
estimateVarianceFunctions	estimateVarianceFunctions
fitInfo	fitInfo
fitNbinomGLMs	fitNbinomGLMs
fitNbinomGLMsForMatrix	fitNbinomGLMsForMatrix
getBaseMeansAndVariances	getBaseMeansAndVariances
getVarianceStabilizedData	getVarianceStabilizedData
makeExampleCountDataSet	makeExampleCountDataSet
nbinomGLMTest	nbinomGLMTest
nbinomTest	nbinomTest
nbinomTestForMatrices	nbinomTestForMatrices
nbkd.sf	nbkd.sf
newCountDataSet	newCountDataSet
newCountDataSetFromHTSeqCount	newCountDataSetFromHTSeqCount
plotDispEsts	plotDispEsts
plotMA	plotMA
plotPCA	plotPCA
residualsEcdfPlot	residualsEcdfPlot
scvPlot	scvPlot
sizeFactors	sizeFactors
sizeFactors,CountDataSet-method	sizeFactors
sizeFactors<-,CountDataSet,numeric-method	sizeFactors
varianceFitDiagnostics	varianceFitDiagnostics
varianceStabilizingTransformation	getVarianceStabilizedData
