6ebe68053663d47da45e0b008d1f9c19 *DESCRIPTION
52df13e172c09d0498331b256f3943e1 *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
581294fc257677c7fd03b00adb433de8 *Meta/Rd.rds
271aede024b7c9a2a7cc36899ba1147b *Meta/data.rds
41265bd653a4ede989485c6b04d612fc *Meta/hsearch.rds
4e82ec8e6451d81f61b259033ea8a295 *Meta/links.rds
7f9b4cc6a5a130bc5f13733a272803ed *Meta/nsInfo.rds
967a7228243eef8c7626e88404b9fe2f *Meta/package.rds
3bcf6bcb8160ed82494a6fae666b9d35 *Meta/vignette.rds
8d8f500f8c7a9b2dff8631b56d147442 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
2f24ec6b770a3d000df4108da77a6299 *R/CNEr.rdb
f1b42bffc80b97db9460387d161ff2bb *R/CNEr.rdx
4d3e8351772649d328ebe10dc44743b5 *data/CNEDanRer7Hg19.rda
4bccccc3af1a32e7f3dfd3e55d70736c *data/CNEHg19DanRer7.rda
eff1642cbb5c189bb94b7d130c74ca83 *data/axisTrack.rda
121ba183adf4a05c8f1a79a5d0ff622e *data/axtDanRer7Hg19.rda
cf26fca2bc1823909e52063fc3f93b94 *data/axtHg19DanRer7.rda
db35fb5e2e1d0905bc4723424de08fe6 *data/cneBlatedDanRer7Hg19.rda
5775d1d647bac07934fb17f470a938f7 *data/cneHg19DanRer7_45_50.rda
ff81c4112f740b9c1fb0648141fcabee *data/cneHg19DanRer7_48_50.rda
6f8de4bd0d1ad0f70874369b94761283 *data/cneHg19DanRer7_49_50.rda
0304f7ed48c725de1004c0cf40dd6c4d *data/cpgIslands.rda
401af71eabf02ebfc9c0d4b0a43dbaa8 *data/finalCNE.rda
14e6ddec0c6ba53c286771cbceef8211 *data/ideoTrack.rda
f18db11fe1a2be1e9a1530b99e38a16e *data/qSizesDanRer7.rda
3968fcb45b4456a38e4f0684ae9d6ac0 *data/qSizesHg19.rda
6a3b6f5d92ce92e440f8ec554df6687a *data/refGenes.rda
52c4279f3cb6a953375e93ac1f79ab3a *doc/CNEr.R
28369ace1d013465c0f7098da49ae351 *doc/CNEr.Rnw
7b22b2fd0630bdd5cebb91a3b40e9055 *doc/CNEr.pdf
c09d64538c1b232166602cfdd86cd43d *doc/index.html
3653df061208be57aab114a13d0fcba9 *extdata/cne.sqlite
0fdd3eb7a81a346d2286e6441fc722e6 *extdata/danRer7.hg19.net.axt
1ebd48b23b13d186884d12a8a8ad61eb *extdata/filter_regions.danRer7.bed
f25dd58fed25d072490ad1c0e5383385 *extdata/filter_regions.hg19.bed
4ec79a4902d3d315ddf7bb1ccc39b8ac *extdata/hg19.danRer7.net.axt
8a097ddae1735c766705c687a362dd0e *help/AnIndex
98fba7ae35780bdc832bc59c94b9e41a *help/CNEr.rdb
02519b18738366e063518fb639ad40a6 *help/CNEr.rdx
3759d501ab814e9cd4bf1b86a52b50ae *help/aliases.rds
9e7dc0e4363e2780bfb122ecfe113eee *help/paths.rds
3344f806bd81a6e8910997cf12b6b9cf *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
62281e810737ac56799c0634bd52616c *libs/i386/CNEr.dll
a5e61629331b579f4acc4ea5f29212e2 *libs/x64/CNEr.dll
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
e6743f23d7e0582ddd22bf9fc739808b *scripts/pipeline.r
e75e7c0fe1da8707d0b79c12ae0e3015 *scripts/prepareFiles.r
5ff3c3d0b4759496b2725175479985a1 *scripts/usePrecomputed.r
7f39245e994e83547594a163edcbfb12 *unitTests/test_reverseCigar.R
10582b9c3b602570483b6823de3f150f *unitTests/test_subAxt.R
