77571da43c6226d4061b4e8b00365de2 *DESCRIPTION
db85201e565020eaea31bc13aec191b3 *INDEX
33c2093672b1755827b7d3404812c3d9 *Meta/Rd.rds
ac530b9c74e1dacdab89a123d6cb1536 *Meta/data.rds
03e63244bee8abd558929958de89c60f *Meta/hsearch.rds
8ca3dc2b4a83eb6eb592db023d63c979 *Meta/links.rds
531da89217f9fcc5adf13d913b5d8897 *Meta/nsInfo.rds
49126e0878e54a96f76309d65d9b1b24 *Meta/package.rds
8c722a5c191b8091b99a19f04bb84306 *Meta/vignette.rds
0e9c52f7bcdb801111ba27915763d85f *NAMESPACE
3a5fbb3686117c9533c9649b898fb26c *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Biostrings
2ca4a0ca046acb9d87cfca817a03343f *R/Biostrings.rdb
fe0a7188d39da257e0ba867cfb90e72e *R/Biostrings.rdx
fb21544885b0d8e223dc707a19f703a6 *data/BLOSUM100.rda
370ae409745a34652b50f6c0992a7c36 *data/BLOSUM45.rda
ff21fdf7ae6c26d41265485e06678c47 *data/BLOSUM50.rda
938f1640bbcee65ce83726127c8efa8f *data/BLOSUM62.rda
ec70a69370ee7b924a1521bd22a0b92a *data/BLOSUM80.rda
4bb649b15a1c70fdc6beb4ea37ca8d58 *data/HNF4alpha.rda
b85025df056de88ad4e0ec260b4fbd3e *data/PAM120.rda
d790bbcef52f77bdbac03ca4fe317a0d *data/PAM250.rda
5ab6a6fb04f2bb2011c96abdea970b87 *data/PAM30.rda
d234baa0914f6233478aa0687fdbe10c *data/PAM40.rda
8533b9535b841e231b9babd78d584885 *data/PAM70.rda
d1f902614de1a9eba90d8387690c2688 *data/phiX174Phage.rda
ea5bd4d16695006aab9061c351649bb6 *data/srPhiX174.rda
e566417a897993c19e4b81e517778b6c *data/yeastSEQCHR1.rda
e919d958d2d4591086ade82640727b72 *doc/Biostrings2Classes.R
d7f69eedb9db937ef0b727cd1d558b8d *doc/Biostrings2Classes.Rnw
a8543ab1c9d1f38ab2635a64caa8caab *doc/Biostrings2Classes.pdf
aa744da0c768a4dcc7f679f66b649cf5 *doc/BiostringsQuickOverview.Rnw
aa77492115bd985874715d3fc90afa48 *doc/BiostringsQuickOverview.pdf
ebaaf15e9ad9332cc13c3b3a26b47c8a *doc/MultipleAlignments.R
61f53dbee2860c3e5cd6924d8e158129 *doc/MultipleAlignments.Rnw
3129389eb0e86f2c44d0351a9e444029 *doc/MultipleAlignments.pdf
2217c12d2babced22046ced6fa07995b *doc/PairwiseAlignments.R
8588847ffbf2f5bddeaf6c21ac130e11 *doc/PairwiseAlignments.Rnw
91764acdee749fa429d7de7be08e4072 *doc/PairwiseAlignments.pdf
49afcaa47379e4ff218158292b782c95 *doc/index.html
7d038597048fefbc1cbd6ce356a58696 *doc/matchprobes.R
b239f15493ac1bc5ab95d1afd25a2b28 *doc/matchprobes.Rnw
7b22825b77b164490034c9e2fda012d3 *doc/matchprobes.pdf
78e8db3ebcbc095287e6fd8ccfe0e1a2 *extdata/Phylip.txt
886d5e4badeaeee2de9e4481e5bc0b43 *extdata/README
24604bc9ec4790d5d590a623edea5548 *extdata/Sc.fa
1a6fe1b8caec191eb16265cc5b1d7563 *extdata/Sp.fa
11861abec072717c887a753e28f05f56 *extdata/dm3_upstream2000.fa.gz
cfea9d61b851d60768c0751e17ab9937 *extdata/fastaEx.fa
c4114941da5b3499beff7b3f87c84166 *extdata/hg18chr8_gap.txt
76897b4820e1ed23b787a171ae4d3b5a *extdata/hg18chrY_gap.txt
3f5e79e34a204b72bb52b2e5d2b79f19 *extdata/msx2_mRNA.aln
23770dfd9eb85ab715b4cc28268bbc42 *extdata/s_1_sequence.txt
6210f3d073b676bc7bed60172a72c3e3 *extdata/someORF.fa
2fc0b8e9625d6ebebf8fca9cb7737ebd *extdata/someORF.fa.gz
8bf850df4aaff7beb558ad51041da507 *help/AnIndex
42baf4e4de6bc174bc435b51c511263b *help/Biostrings.rdb
a54b0ef68e105dbaebd2f11f06684e84 *help/Biostrings.rdx
3bc60f0806f71ec343ddef4c10eaedba *help/aliases.rds
fa11db68d7788d847b80b81d3f78017c *help/paths.rds
5259c1994b1f6901141af578ad360831 *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
62f25a5465e5e88a2c878faa8ef9fbb8 *include/Biostrings_defines.h
14ca556a6eb11b4ae18b470e8ab32301 *include/Biostrings_interface.h
e27db4c0e66fa6c49509cadf03b3616e *include/_Biostrings_stubs.c
22cfe9e21b03305f5837210d9c655663 *libs/i386/Biostrings.dll
282c82dd6b84102bb04ae41886454fd9 *libs/x64/Biostrings.dll
f010aec2e4d0a98e0a1e40e62bae9871 *unitTests/test_MultipleAlignment.R
1437c2c15ae9d298a46c40bdc46455f9 *unitTests/test_XString.R
cedcf97df95ea2184ef767cc4da784a9 *unitTests/test_XStringSet.R
c4c1c9794d5d781a2ea6f15f2876bdb0 *unitTests/test_XStringSetList.R
f72c47b6e10e6895688c8f77cd787e80 *unitTests/test_findPalindromes.R
5a4fe6582d86f20f68c627d1efd511c0 *unitTests/test_matchDNAPattern.R.FIXME
0371bd65424b6b0160dd18f537333cc0 *unitTests/test_matchPDict.R
8d8de95ec1a7f5f539bdd4a286b396e1 *unitTests/test_pairwiseAlignment.R
407a2929d7f9fce74bd30e731a492477 *unitTests/test_twoWayAlphabetFrequency.R
