minfi-package	minfi-package
bgcorrect.illumina	preprocessIllumina
controlStripPlot	controlStripPlot
densityBeanPlot	densityBeanPlot
densityPlot	densityPlot
detectionP	detectionP
dmpFinder	dmpFinder
getAnno	MethylSet-class
getBeta	MethylSet-class
getControlAddress	getProbeData
getGreen	RGChannelSet-class
getM	MethylSet-class
getManifest	RGChannelSet-class
getManifestInfo	getProbeData
getMeth	MethylSet-class
getProbeData	getProbeData
getProbeInfo	getProbeData
getRed	RGChannelSet-class
getUnmeth	MethylSet-class
IlluminaMethylationManifest-class	IlluminaMethylationManifest-class
ilogit2	logit2
initialize,MethylSet-method	MethylSet-class
initialize,RGChannelSet-method	RGChannelSet-class
initialize,RGChannelSetExtended-method	RGChannelSet-class
logit2	logit2
manifestNew	IlluminaMethylationManifest-class
mdsPlot	mdsPlot
MethylSet-class	MethylSet-class
minfi	minfi-package
normalize.illumina.control	preprocessIllumina
plotCpg	plotCpg
preprocessIllumina	preprocessIllumina
preprocessRaw	preprocessRaw
qcReport	qcReport
read.450k	read.450k
read.450k.exp	read.450k.exp
read.450k.sheet	read.450k.sheet
RGChannelSet-class	RGChannelSet-class
RGChannelSetExtended-class	RGChannelSet-class
show,IlluminaMethylationManifest-method	IlluminaMethylationManifest-class
show,MethylSet-method	MethylSet-class
show,RGChannelSet-method	RGChannelSet-class
