IlluminaMethylationManifest-class
                        Class '"IlluminaMethylationManifest"'
MethylSet-class         Class MethylSet
RGChannelSet-class      Class '"RGChannelSet"'
controlStripPlot        Plot control probe signals.
densityBeanPlot         Density bean plots of methylation Beta values.
densityPlot             Density plots of methylation Beta values.
detectionP              Detection p-values for all probed genomic
                        positions.
dmpFinder               Find differentially methylated positions
getProbeData            Utility functions for retrieving array design
                        information for Illumina methylation
                        microarrays.
logit2                  logit in base 2.
mdsPlot                 Multi-dimensional scaling plots giving an
                        overview of similarities and differences
                        between samples.
minfi-package           Analyze Illumina's methylation arrays
plotCpg                 Plot methylation values at an single genomic
                        position
preprocessIllumina      Perform preprocessing as Genome Studio.
preprocessRaw           Creation of a MethylSet without normalization
qcReport                QC report for Illumina Infinium Human
                        Methylation 450k arrays
read.450k               Parsing IDAT files from Illumina methylation
                        arrays.
read.450k.exp           Reads an entire 450k experiment using a sample
                        sheet
read.450k.sheet         Reading an Illumina methylation sample sheet
