biocarta                BioCarta pathways
convertIdentifiers      Convert the node identifiers of a pathway.
cytoscapePlot           Plot a pathway graph in Cytoscape
kegg                    KEGG pathways
nci                     NCI pathways
pathway-class           Class '"pathway"'
pathwayGraph            Graph representing the topology of a pathway
prepareSPIA             Prepare pathway dataset needed by runSPIA.
reactome                Reactome pathways
runDEGraph              Run topological analysis on expression dataset
                        using DEGraph package. See 'testOneGraph'.
runSPIA                 Run SPIA analysis
runTopologyGSA          Run topological analysis on expression dataset
                        using topologyGSA. See topologyGSA.
