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A B C D E F G H I L M N P R S V W Z misc
| alias-method | Class "gt.object" for storing the result of the function gt |
| alias<- | Class "gt.object" for storing the result of the function gt |
| alias<--method | Class "gt.object" for storing the result of the function gt |
| annotation.vandeVijver | Some selected annotations for the breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute, to serve as example data in the globaltest package. (Deprecated) |
| bbase | Goodness of fit testing in regression models using Global Test |
| btensor | Goodness of fit testing in regression models using Global Test |
| checkerboard | Checkerboard plot for Global Test (Deprecated) |
| coefficients-method | Multinomial Logistic Regression |
| combine-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| comparative | Comparative proportions for the Global Test |
| covariates | Global Test diagnostic plots |
| diagnostics | Global Test diagnostic plots |
| draw | Multiple testing correction for the Global Test |
| extract | Class "gt.object" for storing the result of the function gt |
| extract-method | Class "gt.object" for storing the result of the function gt |
| features | Global Test diagnostic plots |
| findFocus | Multiple testing correction for the Global Test |
| fit | Class "gt.result" for results of the function globaltest (Deprecated) |
| fit-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| fitted.values-method | Multinomial Logistic Regression |
| focusLevel | Multiple testing correction for the Global Test |
| geneplot | Gene Plot for Global Test (Deprecated) |
| genesets | Class "gt.result" for results of the function globaltest (Deprecated) |
| genesets-method | Class "GOstructure" (Deprecated) |
| getFocus | Multiple testing on the GO graph (Deprecated) |
| globaltest | Global Test (Deprecated) |
| GOstructure | Class "GOstructure" (Deprecated) |
| GOstructure-class | Class "GOstructure" (Deprecated) |
| gt | Global Test (new implementation, 2009) |
| gt.barplot | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| gt.barplot-class | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| gt.multtest | Correct globaltest results for multiple testing (Deprecated) |
| gt.object | Class "gt.object" for storing the result of the function gt |
| gt.object-class | Class "gt.object" for storing the result of the function gt |
| gt.options | Options for globaltest package |
| gt.result | Class "gt.result" for results of the function globaltest (Deprecated) |
| gt.result-class | Class "gt.result" for results of the function globaltest (Deprecated) |
| gtBroad | Gene set testing of gene set databases using Global Test |
| gtConcept | Gene set testing of gene set databases using Global Test |
| gtGO | Gene set testing of gene set databases using Global Test |
| gtKEGG | Gene set testing of gene set databases using Global Test |
| gtKS | Goodness of fit testing in regression models using Global Test |
| gtLI | Goodness of fit testing in regression models using Global Test |
| gtPS | Goodness of fit testing in regression models using Global Test |
| hist-method | Class "gt.object" for storing the result of the function gt |
| hist-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| inheritance | Multiple testing correction for the Global Test |
| leafNodes | Multiple testing correction for the Global Test |
| length-method | Class "gt.object" for storing the result of the function gt |
| length-method | Class "GOstructure" (Deprecated) |
| length-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| length-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| makeGOstructure | Multiple testing on the GO graph (Deprecated) |
| mlogit | Multinomial Logistic Regression |
| mlogit-class | Multinomial Logistic Regression |
| model.matrix-method | Class "gt.object" for storing the result of the function gt |
| names-method | Class "gt.object" for storing the result of the function gt |
| names-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| names-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| names<--method | Class "gt.object" for storing the result of the function gt |
| names<--method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| names<--method | Class "gt.result" for results of the function globaltest (Deprecated) |
| p.adjust-method | Class "gt.object" for storing the result of the function gt |
| p.value | Class "gt.object" for storing the result of the function gt |
| p.value-method | Class "gt.object" for storing the result of the function gt |
| p.value-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| permutations | Permutations version of the Global Test (Deprecated) |
| plot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| regressionplot | Regression Plot for Global Test (Deprecated) |
| reparamZ | Goodness of fit testing in regression models using Global Test |
| residuals-method | Multinomial Logistic Regression |
| result | Class "gt.object" for storing the result of the function gt |
| result-method | Class "gt.object" for storing the result of the function gt |
| result-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| result-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| reweighZ | Goodness of fit testing in regression models using Global Test |
| sampleplot | Sample Plot for Global Test (Deprecated) |
| sampling | Sampling random 'pathways' for the Global Test |
| scale-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| show-method | Class "gt.object" for storing the result of the function gt |
| show-method | Multinomial Logistic Regression |
| show-method | Class "GOstructure" (Deprecated) |
| show-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| show-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| size | Class "gt.object" for storing the result of the function gt |
| size-method | Class "gt.object" for storing the result of the function gt |
| size-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| sort-method | Class "gt.object" for storing the result of the function gt |
| sort-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| sort-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| sterms | Goodness of fit testing in regression models using Global Test |
| sterms-method | Class "gt.object" for storing the result of the function gt |
| subjects | Global Test diagnostic plots |
| subsets | Class "gt.object" for storing the result of the function gt |
| subsets-method | Class "gt.object" for storing the result of the function gt |
| summary-method | Class "gt.object" for storing the result of the function gt |
| summary-method | Multinomial Logistic Regression |
| vandeVijver | A subset of the Breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute. (Deprecated) |
| weights-method | Class "gt.object" for storing the result of the function gt |
| z.score | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| z.score-method | Class "gt.object" for storing the result of the function gt |
| z.score-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| z.score-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| [-method | Class "gt.object" for storing the result of the function gt |
| [-method | Class "gt.barplot" for results of the functions geneplot and sampleplot (Deprecated) |
| [-method | Class "gt.result" for results of the function globaltest (Deprecated) |
| [[-method | Class "gt.object" for storing the result of the function gt |