Package: genoset
Type: Package
Title: Provides classes similar to ExpressionSet for copy number
        analysis
Version: 1.2.0
Date: 2011-01-15
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: Load, manipulate, and plot copynumber and BAF data. GenoSet class extends eSet by adding a "locData" slot for a RangedData object from the IRanges package. This object contains feature genome location data and provides for simple subsetting on genome location. CNSet and BAFSet extend GenoSet and require assayData matrices for Copy Number (cn) or Log-R Ratio (lrr) and B-Allele Frequency (baf) data. Implements and provides convenience functions for processing of copy number and B-Allele Frequency data.
License: Artistic-2.0
LazyLoad: yes
Depends: Biobase, IRanges
Imports: Biobase, DNAcopy, graphics, IRanges, methods, stats,
        GenomicRanges, BSgenome, Biostrings, bigmemory
Suggests: RUnit
Enhances: multicore, BSgenome.Hsapiens.UCSC.hg19
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
        CopyNumberVariants
Collate: 'DataFrame-methods.R' 'genoset-class.R' 'cnset-class.R'
        'bafset-class.R'
Packaged: 2011-11-01 08:34:29 UTC; biocbuild
Built: R 2.14.0; i386-pc-mingw32; 2011-11-01 12:26:05 UTC; windows
Archs: i386, x64
