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| %like% | Pattern matching using wildcards |
| complete | Complete microbial genome dates |
| doublingTime | Doubling time for genome projects |
| enaExperiment | ENA SRA experiment details |
| enaFiles | ENA SRA submitted or fastq files |
| enaProject | ENA projects |
| enaSRA | ENA sequence read archive |
| enaStudy | ENA SRA study details |
| enaSubmission | ENA SRA submission dates |
| enaTaxonomy | ENA taxonomy statistics |
| genomes | Introduction to the genomes package |
| genomes-lines | Add lines to a genomes plot |
| genomes-plot | Genome table plots by release date |
| genomes-subset | Subset genome tables |
| genomes-summary | Genome table summaries |
| genomes-update | Genome table updates |
| genus | Extract the genus name |
| image2 | Display a matrix image |
| lenvs | Metagenome sequencing projects at NCBI |
| leuks | Eukaryotic genome projects at NCBI |
| like | Pattern matching using wildcards |
| lines.genomes | Add lines to a genomes plot |
| lproks | Microbial genome projects at NCBI |
| month | Parse a date string |
| ncbiGenome | NCBI Genome Database |
| ncbiInfo | NCBI Entrez databases and fields |
| ncbiNucleotide | NCBI Nucleotide database |
| ncbiProject | NCBI BioProject database |
| ncbiPubmed | NCBI PubMed database |
| ncbiRelease | NCBI revision history |
| ncbiSubmit | NCBI submission dates |
| ncbiTaxonomy | NCBI taxonomy database |
| plot.genomes | Genome table plots by release date |
| plotby | Plot groups of genomes by release date |
| print.genomes | Print genome tables |
| pub | Complete microbial genome publications |
| species | Extract the species name |
| sra | Microbial SRA samples at the ENA |
| subset.genomes | Subset genome tables |
| summary.genomes | Genome table summaries |
| table2 | Format and sort a contigency table |
| top | Find the most common values |
| update.genomes | Genome table updates |
| virus | Virus genomes at NCBI |
| year | Parse a date string |