GUI for exploratory data analysis of systems biology data

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Documentation for package ‘explorase’ version 1.18.0

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explorase Start exploRase
exp_addEntityType Add an entity type
exp_addFilterRule Add a filter rule
exp_calcAngleDist Caclulate angle distance
exp_calcCanberraDist Calculate Canberra distance
exp_calcCorrelationDist Calculate correlation distance
exp_calcDiff Calculate difference
exp_calcEuclideanDist Calculate Euclidean distance
exp_calcMahalanobisDist Calculate Mahalanobis distance
exp_calcResiduals Calculate residuals
exp_calcZeroCorDist Calculate zero-correlation distance
exp_close Close exploRase
exp_colorEntities Coloring entities
exp_dataFrame Get experimental data
exp_dataset Get experimental data
exp_designFactors Get the exp. design factors
exp_designFrame Get the exp. design
exp_designSelection Get selected conditions
exp_entitiesInList Get the entities in a list
exp_entityFrame Get entity metadata
exp_entitySelection Get selected entities
exp_entityType Get the current entity type
exp_entityTypes Get all entity types
exp_expressionSet ExpressionSet Integration
exp_featureData ExpressionSet Integration
exp_filterRules Get filter rules
exp_findPatterns Find Patterns
exp_ggobi Get the GGobi session
exp_isRunning Check whether exploRase is running
exp_listFrame Get entity lists
exp_listSelection Get selected lists
exp_loadData Load experimental data
exp_loadDesign Load experimental design
exp_loadExpressionSet ExpressionSet Integration
exp_loadFiles Load files
exp_loadInfo Load entity metadata
exp_loadLists Load entity lists
exp_loadProject Load a project
exp_newList Create an entity list
exp_phenoData ExpressionSet Integration
exp_removeFilterRules Remove filter rules
exp_showClustering Show a hierarchical clustering
exp_showPatterns Show patterns
exp_showResults Show analysis results
exp_toggleFilterRules Toggle filter rules