useDynLib(cosmo, .registration=TRUE)

import(methods, utils, seqLogo)

export(cosmo, bgModel, bfile2tmat, makeConSet, addCon, makeBoundCon,
       makePalCon, makeShapeCon, makeShapeDiffCon, makePosFreqCon,
       makeSubMotifCon, writeConFile, readConFile, rseq, simScore,
       license.cosmo)
exportClasses(align, intInfo, cosmo, constraintSet, boundCon,
              palCon, posFreqCon, shapeCon, shapeDiffCon, 
              subMotifCon) 
exportMethods(plot, summary, print, show)
