.VAUtil-class           ".VAUtil" and potentially other related classes
                        - in progress
MatrixToSnpMatrix       Convert a matrix of genotype calls to a
                        SnpMatrix object
PolyPhenDb-class        PolyPhenDb objects
PolyPhenDbColumns       PolyPhenDb Columns
SIFTDb-class            SIFTDb objects
SIFTDbColumns           SIFTDb Columns
VAFilter-class          "VAFilter" for representing functions operating
                        on genetic variants
VAFilterResult-class    "VAFilterResult" for VAFilter output and
                        statistics
getTranscriptSeqs       Get transcript sequences
globalToLocal           globalToLocal
locateVariants          Locate variants
predictCoding           Predict amino acid coding changes for variants
readVcf                 Read VCF (variant call format) files into a
                        SummarizedExperiment object
vaFilter                Functions for VariantAnnotation filters
variants                Human genetic variant test dataset
