Package: REDseq
Type: Package
Title: Analysis of high-throughput sequencing data processed by
        restriction enzyme digestion
Version: 1.0.0
Date: 2011-07-12
Author: Lihua Julie Zhu and Thomas Fazzio
Maintainer: Lihua Julie Zhu <julie.zhu@umassmed.edu>
Depends: R (>= 2.14.0), BSgenome.Celegans.UCSC.ce2, multtest,
        Biostrings, BSgenome,ChIPpeakAnno
Imports: AnnotationDbi, Biostrings, ChIPpeakAnno, graphics,
        IRanges,multtest, stats, utils
biocViews: Sequencing, SequenceMatching, Preprocessing
Description: The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
License: GPL (>=2)
Packaged: 2011-11-01 08:35:23 UTC; biocbuild
Built: R 2.14.0; ; 2011-11-01 12:45:08 UTC; windows
