Bakal2007               Rich morphological phenotypes for gene
                        overexpression and RNA interference screens
BetaMixture-class       An S4 class for beta mixture modelling of
                        functional gene associations
PAN-class               An S4 class for inferring a posterior
                        association network
assoScore               Association scores for gene pairs
buildPAN                Build an igraph or RedeR graph for PAN
cosineSim               Compute cosine similarities or distances
                        between pairs of genes
exportPAN               Export inferred PAN or module graphs to files
fitBM                   Fit a three-beta mixture model to densities of
                        functional gene associations
fitNULL                 Fit the NULL component of a three-beta mixture
                        model for functional gene associations
infer                   Infer a posterior association network
pvclustModule           Search enriched functional gene modules by
                        pvclust
sigModules              Retrieve ids for significant gene modules
                        searched by pvclust
summarize               Summarize the object of S4 class 'BetaMixture'
                        or 'PAN'
view                    View the results of beta-mixture model fitting
viewLegend              View the legends for the graph built for PAN
viewNestedModules       View the nested modules in a posterior
                        association network in RedeR
viewPAN                 Show posterior association networks or modules
                        in 'igraph' or 'RedeR'
