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| DTA-package | Dynamic Transcriptome Analysis |
| cDTAreliable | cDTA reliable ORFs |
| cDTAtnumber | cDTA tnumber |
| datamat | DTA datamat |
| DTA | Dynamic Transcriptome Analysis |
| DTA.dynamic.estimate | Estimation of synthesis and decay rates upon perturbation |
| DTA.dynamic.generate | Simulation of DTA experiments upon perturbation |
| DTA.estimate | Estimation of synthesis and decay rates |
| DTA.generate | Simulation of DTA experiments |
| DTA.phenomat | Create a phenomat that suits your experiment |
| DTA.plot.it | Plots in any format and any quality |
| orfs_ribig | Ribosome biogenesis genes |
| orfs_rpg | Ribosomal protein genes |
| orfs_stress | ISA stress module |
| orfs_tf | Transcription factors |
| phenomat | DTA phenomat |
| reliable | DTA reliable ORFs |
| RPdatamat | DTA RPdatamat |
| RPphenomat | cDTA RPphenomat |
| tDTAdatamat | tDTA datamat |
| tDTAphenomat | tDTA phenomat |
| tDTAreliable | tDTA reliable ORFs |
| tDTAtnumber | tDTA tnumber |
| tls | Weighted Total Least Square Regression |
| tnumber | DTA tnumber |
| WTdatamat | cDTA WTdatamat |
| WTphenomat | cDTA WTphenomat |