Analysis of data from aCGH experiments using parallel computing and ff objects

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Documentation for package ‘ADaCGH2’ version 1.4.0

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inputDataToADaCGHData Convert CGH data to ff data frames
inputEx1 A fictitious aCGH data set
inputEx2 A fictitious aCGH data set
outputToCGHregions ADaCGH2 output as input to CGHregions
pChromPlot Segment plots for aCGH as PNG
pSegment Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentBioHMM Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentCGHseg Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentDNAcopy Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentGLAD Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHaarSeg Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentHMM Parallelized/"unified" versions of several aCGH segementation algorithms/methods
pSegmentWavelets Parallelized/"unified" versions of several aCGH segementation algorithms/methods
snowfallInit Initialize a cluster of workstations using snowfall